Actinobacteria
Actinobacteria
Actinomycetales
Bifidobacterium spp.
Bacteroidetes
Alistipes spp.
Alistipes onderdonkii
Bacteroides fragilis
Bacteroides spp. & Prevotella spp.
Bacteroides stercoris
Bacteroides zoogleoformans
Parabacteroides johnsonii
Parabacteroides spp.
Firmicutes
Firmicutes
Bacilli Class
Catenibacterium mitsuokai
Clostridia Class
Clostridium L2-50
Dialister invisus
Dialister invisus & Megasphaera micronuciformis
Dorea spp.
Eubacterium biforme
Eubacterium hallii
Eubacterium rectale
Eubacterium siraeum
Faecalibacterium prausnitzii
Lachnospiraceae
Lactobacillus ruminis & Pediococcus acidilactici
Lactobacillus spp.
Phascolarctobacterium spp.
Ruminococcus albus & R. bromii
Ruminococcus gnavus
Streptococcus agalactiae & Eubacterium rectale
Streptococcus salivarius ssp. thermophilus & S. sanguinis
Streptococcus salivarius ssp. Thermophilus
Streptococcus spp.
Veillonella spp.
Proteobacteria
Proteobacteria
Escherichia spp.
Tenericutes
Mycoplasma hominis
Verrucomicrobia
Akkermansia muciniphila
Viruses
Adenovirus F40/41
Norovirus GI/GII
Rotavirus A
Pathogenic Bacteria
Campylobacter (C. jejuni, C. coli and C. lari)
Clostridium difficile (Toxin A/B)
Escherichia coli O157
Enterotoxigenic Escherichia coli (ETEC) lt/st
Salmonella spp.
Shiga-like toxin-producing Escherichia coli (STEC) stx1/stx2
Shigella (S. boydii, S. sonnei, S. flexneri & S. dysenteriae)
Vibrio cholerae
Parasites
Cryptosporidium (C. parvum and C. hominis)
Entamoeba histolytica
Giardia duodenalis (AKA intestinalis & lamblia)
Protozoa
Balantidium coli
Blastocystis spp.
Chilomastix mesnili
Dientamoeba fragilis
Endolimax nana
Entamoeba coli
Entamoeba hartmanni
Entamoeba histolytica/Entamoeba dispar
Entamoeba polecki
Enteromonas hominis
Giardia duodenalis
Iodamoeba bütschlii
Isospora belli
Pentatrichomonas hominis
Retortamonas intestinalis
Cestodes - Tapeworms
Diphyllobothrium latum
Dipylidium caninum
Hymenolepis diminuta
Hymenolepis nana
Taenia
Trematodes - Flukes
Clonorchis sinensis
Fasciola hepatica/Fasciolopsis buski
Heterophyes heterophyes
Paragonimus westermani
Nematodes - Round Worms
Ascaris lumbricoides
Capillaria hepatica
Capillaria philippinensis
Enterobius vermicularis
Hookworm
Strongyloides stercoralis
Trichuris trichiura
Other Markers
Yeast
Red blood cells
White blood cells
Muscle fibres
Vegetable fibres
Charcot-Leyden Crystals
Pollen
Macroscopic Appearance
Colour
Consistency
Mucus
Microbiology
Aeromonas spp.
Edwardsiella tarda
Plesiomonas shigelloides
Salmonella group Shigella spp.
Vibrio cholerae Vibrio spp
Yersinia spp.
Imbalance Bacteria
Alpha hemolytic strep
Gamma hemolytic strep
Staphylococcus aureus
Dysbiotic Bacteria
Morganella morganii
Stool Chemistries
Elastase
Fat stain
Carbohydrates
Lactoferrin
Lysozyme
Calprotectin
Secretory IgA
% Acetate
% Propionate
% Butyrate
% Valerate
Butyrate
Total SCFA's
pH
β-glucuronidase
Occult Blood
Bacterial susceptibilities
Enterobacter cloacae complex
Morganella morganii
Candida albicans